3. Go to Repeatmasker and choose Repeatmasking on the left side column.
4. Enter FASTA sequences by leaving all the other sequences and click
on Submit Sequences
5. The result of Submit Sequences will be shown of summary and others file (Annotation, Masked and Alignment).
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[CELLULAR AND MOLECULAR BIOLOGY]
MTEB 2202
RESULT
1. Summary of the sequences
Summary:
================================================== file name: RM2sequpload_1219311372 sequences: 1 total length: 4410 bp (4410 bp excl N/X-runs) GC level: 42.22 % bases masked: 345 bp ( 7.82 %) ================================================== number of length percentage elements* occupied of sequence -------------------------------------------------SINEs: 1 164 bp 3.72 % ALUs 0 0 bp 0.00 % MIRs 1 164 bp 3.72 % LINEs: LINE1 LINE2 L3/CR1 LTR elements: ERVL ERVL-MaLRs ERV_classI ERV_classII DNA elements: hAT-Charlie TcMar-Tigger Unclassified: 1 0 1 0 0 0 0 0 0 0 0 0 0 66 0 66 0 0 0 0 0 0 bp bp bp bp bp bp bp bp bp 1.50 0.00 1.50 0.00 0.00 0.00 0.00 0.00 0.00 % % % % % % % % %
0 bp 0 bp 0 bp 0 bp 230 bp 0 bp
0.00 % 0.00 % 0.00 % 0.00 % 5.22 % 0.00 %
Total interspersed repeats: Small RNA: 0
Satellites: 0 0 bp 0.00 % Simple repeats: 1 42 bp 0.95 % Low complexity: 2 73 bp 1.66 % ==================================================
* most repeats fragmented by insertions or deletions have been counted as one element The query species was assumed to be homo RepeatMasker version open-3.2.6 , default mode run with blastp version 2.0MP-WashU RepBase Update 20080801, RM database version 20080801
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[CELLULAR AND MOLECULAR BIOLOGY]
MTEB 2202
2. Annotation File: RM2sequpload_1219311372.out.html ( NEW XHTML